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  Data Repository
    Here, we present human age inference and origination mechanism inference based on Ensembl version73 and fly age inference based on Ensembl version78. Mysql dump for human age and origination mechanism inference is also available. In brief, we filtered inferences involved in repeat regions and concluded the gene-level inference by assigning them the oldest origination. We further screened the dataset for genes that are annotated as protein coding gene by Ensembl and that are not located on chromosome Y or mitochondrion. Data are released in the format of tsv (tab separated text file) and xlsx (Microsoft Excel file). Note that unix line break is adopted in tsv format.
    Human age inference and origination mechanism inference have been updated based on Ensembl version95 (README).
  Human Data
Gene Age Inference  
Ensembl Ver73(hg19)
Age Inference: TSV(647K), XLSX(546K)
 
Ensembl Ver95(hg38)
Age Inference: TSV(622K), XLSX(490K)
Origination Mechanism
     Inference		  
Ensembl Ver73(hg19)
Mechanism Inference: TSV(83K), XLSX(77K)
 
Ensembl Ver95(hg38)
Mechanism Inference: TSV(77K), XLSX(72K)
Mysql Dump  
Ensembl Ver73(hg19)
All Tables: SQL(821M)
 
  Fly Data
Gene Age Inference  
Metazoa release 25(dm6)
Age Inference: TSV(332K), XLSX(342K)
Origination Mechanism
     Inference		  
Metazoa release 25(dm6)
Mechanism Inference: TSV(40K), XLSX(53K)
  Mouse Data
Gene Age Inference  
Ensembl Ver69(mm10)
Age Inference: TSV(868K), XLSX(568K)
 
Ensembl Ver95(mm10)
Age Inference: TSV(752K), XLSX(498K)
Origination Mechanism
     Inference		  
Ensembl Ver95(mm10)
Mechanism Inference: TSV(94K), XLSX(75K)
  Rat Data
Gene Age Inference  
Ensembl Ver69(rn4)
Age Inference: TSV(892K), XLSX(568K)
  Opossum Data
Gene Age Inference  
Ensembl Ver69(monDom5)
Age Inference: TSV(788K), XLSX(488K)
  Chicken Data
Gene Age Inference  
Ensembl Ver69(galGal3)
Age Inference: TSV(600K), XLSX(372K)


Last Modified at March 10, 2023
Copyright@ 2013-2024 by the ZhangLab colleagues, CAS,
Any Comments and suggestions mail to:zhanglabioz@gmail.com